USRTK asks ODNI to declassify documents about accidents at labs that store dangerous pathogens

Print Email Share Tweet

U.S. Right to Know (USRTK) has asked the Office of the Director of National Intelligence (ODNI) to declassify three documents about biosafety lapses occurring in laboratories that store dangerous pathogens.

The mandatory declassification review (MDR) request responds to ODNI’s decision to withhold three classified documents responsive to a Freedom of Information Act request USRTK submitted in August 2020.

The FOIA request “sought finished intelligence produced since January 2015 about the accidental or deliberate release of biological agents, containment failures in biosafety-level (BSL)-2, BSL-3 or BSL-4 research facilities, and other incidents of concern related to dual-use biosafety research in BSL-2, BSL-3 or BSL-4 research facilities in Canada, China, Egypt, France, Germany, India, Iran, Israel, the Netherlands, Russia, former countries of the Soviet Union, South Africa, Taiwan, the United Kingdom, and Thailand.”

ODNI said in its response that it had located three documents, and determined these “must be withheld in their entirety pursuant to FOIA exemptions” regarding the protection of classified materials concerning intelligence methods and sources of national security relevance. ODNI did not describe or characterize the nature of the three documents or their contents, other than that they were responsive to the FOIA request.

In its MDR request, USRTK requested that ODNI release all reasonably segregable nonexempt portions of the three documents.

USRTK believes the public has a right to know what data exists about accidents, leaks and other mishaps at laboratories where pathogens of pandemic potential are stored and modified, and whether any such leaks are implicated in the origins of COVID-19, which has caused the deaths of more than 360,000 Americans.

For more information:

U.S. Right to Know is posting documents from our public records requests for our biohazards investigation. See: FOI documents on origins of SARS-CoV-2, hazards of gain-of-function research and biosafety labs.

Background page on U.S. Right to Know’s investigation into the origins of SARS-CoV-2.

Altered datasets raise more questions about reliability of key studies on coronavirus origins

Print Email Share Tweet

Revisions to genomic datasets associated with four key studies on coronavirus origins add further questions about the reliability of these studies, which provide foundational support for the hypothesis that SARS-CoV-2 originated in wildlife. The studies, Peng Zhou et al., Hong Zhou et al., Lam et al., and Xiao et al., discovered SARS-CoV-2-related coronaviruses in horseshoe bats and Malayan pangolins.

The studies’ authors deposited DNA sequence data called sequence reads, which they used to assemble bat- and pangolin-coronavirus genomes, in the National Center for Biotechnology Information (NCBI) sequence read archive (SRA). NCBI established the public database to assist independent verification of genomic analyses based on high-throughput sequencing technologies.

U.S. Right to Know obtained documents by a public records request that show revisions to these studies’ SRA data months after they were published. These revisions are odd because they occurred after publication, and without any rationale, explanation or validation.

For example, Peng Zhou et al. and Lam et al. updated their SRA data on the same two dates. The documents don’t explain why they altered their data, only that some changes were made. Xiao et al. made numerous changes to their SRA data, including the deletion of two datasets on March 10, the addition of a new dataset on June 19, a November 8 replacement of data first released on October 30, and a further data change on November 13 — two days after Nature added an Editor’s “note of concern” about the study. Hong Zhou et al. have yet to share the full SRA dataset that would enable independent verification. While journals like Nature require authors to make all data “promptly available” at the time of publication, SRA data can be released after publication; but it is unusual to make such changes months after publication.

These unusual alterations of SRA data do not automatically make the four studies and their associated datasets unreliable. However, the delays, gaps and changes in SRA data have hampered independent assembly and verification of the published genome sequences, and add to questions and concerns about the validity of the four studies, such as:

  1. What were the exact post-publication revisions to the SRA data? Why were they made? How did they affect the associated genomic analyses and results?
  2. Were these SRA revisions independently validated? If so, how? The NCBI’s only validation criterion for publishing an SRA BioProject– beyond basic information such as “organism name”– is that it cannot be a duplicate.

For more information: 

The National Center for Biotechnology Information (NCBI) documents can be found here: NCBI emails (63 pages)

U.S. Right to Know is posting documents from our public records requests for our biohazards investigation. See: FOI documents on origins of SARS-CoV-2, hazards of gain-of-function research and biosafety labs.

Background page on U.S. Right to Know’s investigation into the origins of SARS-CoV-2.

No peer review for addendum to prominent coronavirus origins study?

Print Email Share Tweet

The journal Nature did not assess the reliability of important claims made in a November 17 addendum to a study on the bat-origins of the novel coronavirus SARS-CoV-2, correspondence with Nature staff suggests.

On February 3, 2020, Wuhan Institute of Virology scientists reported discovering the closest known relative of SARS-CoV-2, a bat coronavirus called RaTG13. RaTG13 has become central to the hypothesis that SARS-CoV-2 originated in wildlife.

The addendum addresses unanswered questions about the provenance of RaTG13. The authors, Zhou et al., clarified they found RaTG13 in 2012-2013 “in an abandoned mineshaft in Mojiang County, Yunnan Province,” where six miners suffered acute respiratory distress syndrome after exposure to bat feces, and three died. Investigations of the symptoms of the sickened miners could provide important clues about the origins of SARS-CoV-2. Zhou et al. reported finding no SARS-related coronaviruses in stored serum samples of the sick miners, but they did not support their claims with data and methods about their assays and experimental controls.

The absence of key data in the addendum has raised further questions about the reliability of the Zhou et al. study. On November 27, U.S. Right to Know asked Nature questions about the addendum’s claims, and requested that Nature publish all supporting data that Zhou et al. may have provided.

On December 2, Nature Head of Communications Bex Walton replied that the original Zhou et al.  study was “accurate but unclear,” and that the addendum was an appropriate post-publication platform for clarification. She added: “With regards to your questions, we would direct you to approach the authors of the paper for answers, as these questions pertain not to the research that we have published but to other research undertaken by the authors, upon which we cannot comment” (emphasis ours). Since our questions related to research described in the addendum, the Nature representative’s statement suggests Zhou et al.’s addendum was not evaluated as research.

We asked a follow up question on December 2: “was this addendum subjected to any peer-review and/or editorial oversight by Nature?” Ms. Walton did not answer directly; she replied: “In general, our editors will assess comments or concerns that are raised with us in the first instance, consulting the authors, and seeking advice from peer reviewers and other external experts if we consider it necessary. Our confidentiality policy means we cannot comment on the specific handling of individual cases.”

Since Nature considers an addendum to be a post-publication update, and does not subject such post publication addenda to the same peer-review standards as original publications, it seems likely that the Zhou et al. addendum did not undergo peer-review.

Authors Zhengli Shi and Peng Zhou did not respond to our questions about their Nature addendum.

Items from coronavirus expert Ralph Baric‘s emails 

Print Email Share Tweet

This page lists documents in Professor Ralph Baric’s emails, which U.S. Right to Know obtained via a public records request. Dr. Baric is a coronavirus expert at the University of North Carolina, Chapel Hill (UNC). He has developed genetic techniques to enhance the pandemic potential of existing bat coronaviruses in collaboration with Dr. Zhengli Shi at the Wuhan Institute of Virology and with EcoHealth Alliance.

The emails show internal discussions and an early draft of a key scientists’ letter about coronavirus origins, and shed some light on relationships between U.S. and Chinese experts in biodefense and infectious diseases, and the roles of organizations such as EcoHealth Alliance and National Academy of Sciences (NAS).

Please email anything of interest we may have missed to, so that we can include them below.

Items from Baric emails

  1. Tracy McNamara, Professor of Pathology at Western University of Health Sciences in Pomona, California wrote on March 25, 2020: : “The Federal govt has spent over $1 billion dollars in support of the Global Health Security Agenda to help developing nations create the capacity to detect/report/respond to pandemic threats. An additional $200 million was spent on the PREDICT project via USAID looking for emerging viruses in bats, rats and monkeys overseas. And now the Global Virome Project wants $1.5 billion dollars to run around the world hunting down every virus on the face of the earth. They will probably get funding. But none of these programs have made taxpayers safer right here at home.” (emphasis in the original)
  2. Dr. Jonathan Epstein, Vice President for Science and Outreach at EcoHealth Alliance, sought guidance for a request from the U.S. Defense Advanced Research Projects Agency (DARPA) about communicating “potentially sensitive dual-use information” (March 2018).
  3. EcoHealth Alliance paid Dr. Baric an undisclosed sum as honorarium (January 2018).
  4. Invitation to U.S. National Academy of Sciences, Engineering and Medicine (NASEM) and the Chinese Academy of Agricultural Sciences (CAAS) U.S. China Dialogue and Workshop on the Challenges of Emerging Infections, Laboratory Safety, Global Health Security and Responsible Conduct in the Use of Gene Editing in Viral Infectious Disease Research, Harbin, China, Jan 8-10, 2019 (November 2018-January 2019). Preparatory emails and a travel memorandum indicate the identities of the American participants.
  5. NAS invitation to a meeting of U.S. and Chinese experts working to counter infectious disease and improve global health (November 2017). The meeting was convened by the NAS and the Galveston National Laboratory. It took place on January 16-18, 2018, in Galveston, Texas. A travel memorandum indicates the identities of the American participants. Subsequent emails show that the WIV’s Dr. Zhengli Shi is present at the meeting.
  6. On February 27, 2020, Baric wrote, “at this moment the most likely origins are bats, and I note that it is a mistake to assume that an intermediate host is needed.”
  7. On March 5, 2020, Baric wrote, “there is absolutely no evidence that this virus is bioengineered.”

For more information:

A link to Professor Ralph Baric’s emails can be found here: Baric emails (~83,416 pages)

U.S. Right to Know is posting documents from our Biohazards investigation. See: FOI documents on origins of SARS-CoV-2, hazards of gain-of-function research and biosafety labs.